PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7BS_F44A273F8.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARF
Protein Properties Length: 1038aa    MW: 115881 Da    PI: 6.5956
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7BS_F44A273F8.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B364.51.6e-2074175199
                            EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                            f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++   W++++i+r++++r++lt+GW+ F + ++L +gD+v+F
  Traes_7BS_F44A273F8.2  74 FCKTLTASDTSTHGGFSVPRRAAERIfprldfSLQPPA-QELQARDLHDTIWTFRHIFRGQPKRHLLTTGWSLFISGKRLLAGDSVLF 160
                            99*****************************9777665.49*********************************************** PP

                            EE-SSSEE..EEEEE-S CS
                     B3  83 kldgrsefelvvkvfrk 99 
                               ++ +++l+++++r+
  Traes_7BS_F44A273F8.2 161 I--RDAKQQLLLGIRRA 175
                            *..45677789999997 PP

2Auxin_resp118.45.7e-39200283183
             Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                            aahaa+++s F+++YnPras+seFv++++k++ka++ +++s+GmRf+m+fete+s +rr++Gt++g+sdldpvrW+nS+Wr+++
  Traes_7BS_F44A273F8.2 200 AAHAAANNSQFTIFYNPRASPSEFVIPFAKYQKAVYgNQLSLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNIQ 283
                            79**********************************9********************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.44E-4163203IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.6E-3866189IPR015300DNA-binding pseudobarrel domain
CDDcd100179.34E-1773163No hitNo description
SMARTSM010192.0E-1874176IPR003340B3 DNA binding domain
PfamPF023621.7E-1874175IPR003340B3 DNA binding domain
PROSITE profilePS5086311.19474176IPR003340B3 DNA binding domain
PfamPF065071.4E-33200283IPR010525Auxin response factor
PfamPF023093.5E-99171010IPR033389AUX/IAA domain
PROSITE profilePS5174526.7659251009IPR000270PB1 domain
SuperFamilySSF542772.06E-79291004No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1038 aa     Download sequence    Send to blast
MRKDADAQIP SYPNLPSKLI CILHSVTMQS DPDTDEVYAR MTLQPVSNVT QCDKEILLAS  60
ELALKQNKPQ TEFFCKTLTA SDTSTHGGFS VPRRAAERIF PRLDFSLQPP AQELQARDLH  120
DTIWTFRHIF RGQPKRHLLT TGWSLFISGK RLLAGDSVLF IRDAKQQLLL GIRRANRQPT  180
NLSSSVLSSD SMHIGVLAAA AHAAANNSQF TIFYNPRASP SEFVIPFAKY QKAVYGNQLS  240
LGMRFRMMFE TEESGTRRYM GTITGISDLD PVRWKNSQWR NIQVAWDEAA PSERRTRVSL  300
WDIEPVIAPF FIYPTPLFTA KCARQPGMID DDTSGMDNVF KRTMPWLGEE ICKKDMNTQN  360
SIVPGLNLAQ SLQWMNMQQN LSLAGTVMQP ELLNSLAGKH VQNLSAADIS RQISFQPQFL  420
QQNNIQFSTS LLPQQNQQAE QLAKAIGTPN QLGNIMVPQK VDQDCNSDQK QHTVTQSVQG  480
SQANLNVTQP EHVVQAQFQQ PRVILQAQLQ QQQPLVQSHT VFQGGLQQIQ VLQQQQPHLQ  540
QQLQQQQPQH HQQVQHSVQE QQQMKTQPVH VSSDVNMNTQ LSDHQMKLQL LKALHSQQHL  600
TMEQQKMLFD LQQQVVNSQS DPQQCVQGAT QTVGFHNRNT IQYATQQKAQ SHQPVEDSPR  660
GTIPVAKSDV VTSMGASSLN VAGRMQSVRT DNVPSSSTSP SPSTATNHVL LQSIPSSSKN  720
QSLPTAAKTS QSSVVLGPTI EQEMKSYQSV KPTIMIPKMI EQGPATERDY INNPHMDYLD  780
TSSSATSVCL SQADGSLQQN FPSSSFDQHQ LLRDTAPDSE FEISDPTNNL LFGVNIDGQL  840
GLPLNADALL ANSIENDKFM DEMAGNGISN YISSKDSQQE LSSSMISHSL GVADMGFNSI  900
DSAINDPSFL NRNSRAPAPA HQRMRTYTKV HKRGAVGRSI DMNRYSGYDE LKHDIARMFG  960
IEGQLGDQSR VGWKLVYEDH EKDVLLVGDD PWEDFLNCVR CIRILSPQEE MQMRLVGDFG  1020
DGFLPNQACS SSDGGQPW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-142230489388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). {ECO:0000256|RuleBase:RU004561}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3746130.0AK374613.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3070K03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003574778.20.0PREDICTED: auxin response factor 21-like
SwissprotQ6YZW00.0ARFU_ORYSJ; Auxin response factor 21
TrEMBLW5HWY00.0W5HWY0_WHEAT; Auxin response factor
STRINGMLOC_14584.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140935106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.11e-179auxin response factor 19
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]